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Strengthening global-change science by integrating aeDNA with paleoecoinformatics
Department of Geography, University of Wisconsin-Madison, WI, Madison, United States.
Department of Environmental Science and Lake Erie Center, University of Toledo, OH, Toledo, United States.
The Arctic University Museum of Norway, UiT The Arctic University of Norway, Tromsø, Norway; Centre for Palaeogenetics, Svante Arrhenius väg 20C, Stockholm, Sweden; Department of Geological Sciences, Stockholm University, Stockholm, Sweden.
Department of Life and Environmental Sciences, University of California -Merced, CA, Merced, United States.
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2023 (Engelska)Ingår i: Trends in Ecology & Evolution, ISSN 0169-5347, E-ISSN 1872-8383, Vol. 38, nr 10, s. 946-960Artikel, forskningsöversikt (Refereegranskat) Published
Abstract [en]

Ancient environmental DNA (aeDNA) data are close to enabling insights into past global-scale biodiversity dynamics at unprecedented taxonomic extent and resolution. However, achieving this potential requires solutions that bridge bioinformatics and paleoecoinformatics. Essential needs include support for dynamic taxonomic inferences, dynamic age inferences, and precise stratigraphic depth. Moreover, aeDNA data are complex and heterogeneous, generated by dispersed researcher networks, with methods advancing rapidly. Hence, expert community governance and curation are essential to building high-value data resources. Immediate recommendations include uploading metabarcoding-based taxonomic inventories into paleoecoinformatic resources, building linkages among open bioinformatic and paleoecoinformatic data resources, harmonizing aeDNA processing workflows, and expanding community data governance. These advances will enable transformative insights into global-scale biodiversity dynamics during large environmental and anthropogenic changes.

Ort, förlag, år, upplaga, sidor
Elsevier, 2023. Vol. 38, nr 10, s. 946-960
Nyckelord [en]
ancient environmental DNA, community-curated data resources, global change ecology, metabarcoding, paleoecoinformatics
Nationell ämneskategori
Bioinformatik och beräkningsbiologi Ekologi
Identifikatorer
URN: urn:nbn:se:umu:diva-209185DOI: 10.1016/j.tree.2023.04.016ISI: 001079251100001PubMedID: 37230884Scopus ID: 2-s2.0-85159900195OAI: oai:DiVA.org:umu-209185DiVA, id: diva2:1763956
Anmärkning

Contributing authors: Alsos, Inger Greve; Bowler, Chris; Coolen, Marco J.L.; Cullen, Nicola; Crump, Sarah; Epp, Laura Saskia; Fernandez-Guerra, Antonio; Grimm, Eric; Herzschuh, Ulrike; Mereghetti, Alessandro; Meyer, Rachel Sarah; Nota, Kevin; Pedersen, Mikkel Winther; Pérez, Vilma; Shapiro, Beth; Stoof-Leichsenring, Kathleen R.; Wood, Jamie.

Tillgänglig från: 2023-06-08 Skapad: 2023-06-08 Senast uppdaterad: 2025-02-05Bibliografiskt granskad

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Capo, Eric

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Institutionen för ekologi, miljö och geovetenskap
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Trends in Ecology & Evolution
Bioinformatik och beräkningsbiologiEkologi

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