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RadioPathomics: multimodal learning in non-small cell lung cancer for adaptive radiotherapy
Campus Bio-Medico University of Rome, Unit of Computer Systems and Bioinformatics, Department of Engineering, Rome, Italy.
Campus Bio-Medico University of Rome, Unit of Computer Systems and Bioinformatics, Department of Engineering, Rome, Italy.
Campus Bio-Medico University of Rome, Unit of Computer Systems and Bioinformatics, Department of Engineering, Rome, Italy.
Campus Bio-Medico University of Rome, Unit of Anatomical Pathology, Department of Medicine, Rome, Italy.
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2023 (English)In: IEEE Access, E-ISSN 2169-3536, Vol. 11, p. 47563-47578Article in journal (Refereed) Published
Abstract [en]

Current practice in cancer treatment collects multimodal data, such as radiology images, histopathology slides, genomics and clinical data. The importance of these data sources taken individually has fostered the recent rise of radiomics and pathomics, i.e., the extraction of quantitative features from radiology and histopathology images collected to predict clinical outcomes or guide clinical decisions using artificial intelligence algorithms. Nevertheless, how to combine them into a single multimodal framework is still an open issue. In this work, we develop a multimodal late fusion approach that combines hand-crafted features computed from radiomics, pathomics and clinical data to predict radiotherapy treatment outcomes for non-small-cell lung cancer patients. Within this context, we investigate eight different late fusion rules and two patient-wise aggregation rules leveraging the richness of information given by CT images, whole-slide scans and clinical data. The experiments in leave-one-patient-out cross-validation on an in-house cohort of 33 patients show that the proposed fusion-based multimodal paradigm, with an AUC equal to 90.9%, outperforms each unimodal approach, suggesting that data integration can advance precision medicine. The results also show that late fusion favourably compares against early fusion, another commonly used multimodal approach. As a further contribution, we explore the chance to use a deep learning framework against hand-crafted features. In our scenario characterised by different modalities and a limited amount of data, as it may happen in different areas of cancer research, the results show that the latter is still a viable and effective option for extracting relevant information with respect to the former.

Place, publisher, year, edition, pages
IEEE, 2023. Vol. 11, p. 47563-47578
Keywords [en]
Late fusion, machine learning, multimodal learning, non-small-cell lung cancer, pathomics, radiomics
National Category
Radiology, Nuclear Medicine and Medical Imaging Cancer and Oncology
Identifiers
URN: urn:nbn:se:umu:diva-210287DOI: 10.1109/ACCESS.2023.3275126ISI: 001010128600001Scopus ID: 2-s2.0-85159837640OAI: oai:DiVA.org:umu-210287DiVA, id: diva2:1772026
Available from: 2023-06-21 Created: 2023-06-21 Last updated: 2023-09-05Bibliographically approved

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Soda, Paolo

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