River management is founded on predictable self-organisation between river form and catchment controls in alluvial rivers. However, a substantial proportion of rivers are not fully alluvial. In previously glaciated landscapes, boulder-rich glacial till influences river channel form and process. Increasing interest in nature- and process-based river restoration requires knowledge of pre-disturbance natural processes, which does not exist for semi- and non-alluvial rivers in Fennoscandia. We aimed to determine the role of Pleistocene glaciation and subsequent deglaciation versus Holocene fluvial processes in controlling channel form of boulder-bed rivers in Fennoscandia. We quantified morphological characteristics of northern Swedish boulder-bed rivers, in which channel morphology was minimally impacted by humans, and used the degree of alluvial signatures to infer fluvial and legacy glacial controls. We conducted surveys of reach-scale channel geometry, boulder and wood distributions and catchment characteristics for 20 reference reaches (drainage area: 11–114 km2). Reaches ranged in slope from 1% to 8% and were extremely diverse in channel geometry. Rivers showed little self-organisation at the reach scale; no association exists between channel width and channel slope or bed sediment size. Boulders were rarely clustered into bedforms (e.g., step-pools) typical of boulder-bed mountain rivers. Drainage area was positively correlated with channel capacity but not channel width, slope or sediment size. Channel boulder density was best predicted by surveys of terrestrial boulders. Consequently, channel geometry, boulder size and the distribution of boulders were primarily controlled by legacy glacial conditioning rather than current fluvial processes, with some alluvial adjustment of smaller particles within the boulder template. Therefore, restoration of semi-alluvial rivers should take into account local sediment and geomorphic conditions rather than use management principles built for fully alluvial rivers.