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Transcriptomic analysis of a cold-resistant Nordic microalga: unravelling the mechanisms underlying adaptation to low temperatures
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Kemiska institutionen.
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Kemiska institutionen.
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Kemiska institutionen.
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Kemiska institutionen.
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2024 (Engelska)Ingår i: Physiologia Plantarum, ISSN 0031-9317, E-ISSN 1399-3054, Vol. 176, nr 3, artikel-id e14402Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Cold stress imposes a great physiological impact on most photosynthetic organisms. The acclimation to cold is very poorly studied in microalgae, even though understanding the molecular mechanisms underlying their cold tolerance has implications for biotechnological applications, such as the development of cold-tolerant strains for industrial purposes. Scenedesmus sp. B2-2 is a Nordic strain of green freshwater microalgae that thrives in cold conditions. Here, we analyzed transcriptomic changes of B2-2 when exposed to the cold (5°C) and compared it to a control grown at 25°C. The aim was to understand more about the mechanisms underlying B2-2's adaptation to low temperatures. We studied differentially expressed genes (DEGs) related to lipid synthesis, carbon metabolism and photosynthesis. Scenedesmus sp. B2-2 produced more lipids when exposed to cold conditions and did not reduce its carbon metabolism or photosynthetic processes. 24 putative cold-responsive genes were found to be non-responsive in Scenedesmus sp. B2-2 when grown at 5°C. These genes could serve as targets for genetic engineering to enhance cold tolerance in algal strains used in biotechnology. We also studied B2-2´s cell wall changes in response to cold by measuring cell wall thickness at 1, 4, 12, 24, 48, 72, 120 and 240 hours of cold exposure and correlating the results to the transcriptomic data. The results show that the cell wall thickens with increased duration of cold exposure. Several glycosyltransferases were found to be significantly up-regulated throughout cold exposure and may play a role in cell wall thickening.

Ort, förlag, år, upplaga, sidor
John Wiley & Sons, 2024. Vol. 176, nr 3, artikel-id e14402
Nationell ämneskategori
Biokemi Molekylärbiologi
Identifikatorer
URN: urn:nbn:se:umu:diva-224010DOI: 10.1111/ppl.14402ISI: 001252429200001Scopus ID: 2-s2.0-85196669019OAI: oai:DiVA.org:umu-224010DiVA, id: diva2:1856209
Forskningsfinansiär
Forskningsrådet Formas, 2019-00492Tillgänglig från: 2024-05-06 Skapad: 2024-05-06 Senast uppdaterad: 2025-04-24Bibliografiskt granskad
Ingår i avhandling
1. Guardians of green gold: exploring microalgal cell walls and their significance in industrial processing
Öppna denna publikation i ny flik eller fönster >>Guardians of green gold: exploring microalgal cell walls and their significance in industrial processing
2024 (Engelska)Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
Alternativ titel[sv]
Väktare av grönt guld : utforskning av mikroalgers cellväggar och deras betydelse i industriell bearbetning
Abstract [en]

Microalgae are a remarkable source of high-value compounds. They can rapidly and efficiently produce proteins, lipids, antioxidants, omega-3s, pigments and many other compounds that are of great interest to pharmaceutical, cosmetic, food, feed, and fuel industries. Their fast growth rate, lack of need for fertile land, and their ability to capture carbon more efficiently than higher plants, further highlights their immense potential.

However, microalgal cells are surrounded by a thick and robust cell wall that hampers the extraction of compounds of interest. Furthermore, the interaction of the cell wall with its environment greatly impacts algal harvesting. Despite their significant role in downstream processing, there is a lack of knowledge about algal cell walls, and specifically about their structure and composition. This thesis aimed to address this knowledge gap by studying the cell walls of various Nordic microalgal strains and their involvement in harvesting (paper II), extraction (paper I), and nutrient removal processes (paper IV). This research aims to mitigate the monetary and energetic costs that are currently hindering the microalgal industry from reaching its full potential.

This thesis shows that cell walls vary not only with the algal strain (paper I) but also with growth phases (paper I) and growth conditions (paper III). The plasticity of the cell wall means that its composition cannot be defined per se. However, this thesis describes methodologies and techniques that can be used for cell wall characterization and visualization for future researchers that would like to investigate the cell walls of their own algal strains under varying conditions. Characterization techniques used in this thesis include Fourier Transform Infrared Spectroscopy (FTIR), Cryogenic-X-ray photoelectron spectroscopy (Cryo-XPS), Transmission electron microscopy (TEM), Scanning electron microscopy (SEM) and Gas Chromatography- Mass spectrometry (GC-MS).

Ort, förlag, år, upplaga, sidor
Umeå: Umeå University, 2024. s. 79
Nyckelord
Microalgae, cell wall, algal harvesting, compound extraction, cell wall composition, biotechnology, biochemistry
Nationell ämneskategori
Biokemi Molekylärbiologi Kemi
Identifikatorer
urn:nbn:se:umu:diva-224011 (URN)978-91-8070-358-1 (ISBN)978-91-8070-359-8 (ISBN)
Disputation
2024-05-30, Stora Hörsalen, KBC, 10:00 (Engelska)
Opponent
Handledare
Tillgänglig från: 2024-05-08 Skapad: 2024-05-06 Senast uppdaterad: 2025-02-20Bibliografiskt granskad

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Spain, OliviaBajhaiya, Amit K.Tanner, HughCook, SamFunk, Christiane

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