Fibrillarin-dependent 2′-O-methylation modulates RPS28 ribosome incorporation and oncogenic translationUmeå University, Faculty of Medicine, Wallenberg Centre for Molecular Medicine at Umeå University (WCMM). Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Center of Excellence for the Chemical Mechanisms of Life, Uppsala University, Uppsala, Sweden; Department of Organic and Physical Chemistry, Faculty of Pharmacy, Medical University of Warsaw, Warsaw, Poland.
Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Center of Excellence for the Chemical Mechanisms of Life, Uppsala University, Uppsala, Sweden.
Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Umeå University, Faculty of Medicine, Department of Medical and Translational Biology.
Université de Lorraine, SMP IBSLor, Epitranscriptomics and RNA Sequencing Core Facility, Nancy, France.
Department of Clinical Sciences Lund, Oncology, Lund University and Skåne University Hospital, Lund, Sweden; Department of Hematology, Oncology and Radiation Physics, Skåne University Hospital, Malmö, Sweden.
Department of Pathology, “Iuliu Hatieganu” University of Medicine and Pharmacy Cluj-Napoca, Cluj-Napoca, Romania; Department of Pathology, “Prof. Dr. Ion Chiricuta” Institute of Oncology Cluj-Napoca, Cluj-Napoca, Romania.
Université de Lorraine, SMP IBSLor, Epitranscriptomics and RNA Sequencing Core Facility, Nancy, France; Université de Lorraine, CNRS, IMoPA (UMR7365), Nancy, France.
Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Center of Excellence for the Chemical Mechanisms of Life, Uppsala University, Uppsala, Sweden.
Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, Heidelberg, Germany; Division of Biochemistry, Mannheim Institute for Innate Immunoscience (MI3), Mannheim Cancer Center (MCC), Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
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2026 (English)In: Cancer Letters, ISSN 0304-3835, E-ISSN 1872-7980, Vol. 639, article id 218124Article in journal (Refereed) Published
Abstract [en]
Fibrillarin (FBL), a core component of the C/D box small nucleolar ribonucleoprotein (snoRNP) complex, catalyzes the 2′-O-methylation (Nm) of the ribose 2′-hydroxyl moiety in ribosomal RNA (rRNA). Distinct Nm patterns contribute to ribosome heterogeneity, which is linked to selective translation of oncogenes. FBL dysregulation generates an aberrant Nm signature in triple-negative breast cancer (TNBC), the most aggressive breast cancer subtype. This study investigated the role of FBL in TNBC via translation-driven mechanisms. Our findings show that FBL knockdown impairs oncogenic traits, triggers metabolic stress, and reduces the translation efficiency of oncogenes, such as metastasis-associated protein 1 ( MTA1 ), interleukin-1 receptor-associated kinase 1 ( IRAK1 ), and thymosin beta 10 ( TMSB10 ). RiboMethSeq confirmed that the rRNA Nm sites exhibited differential sensitivity to FBL depletion. Additionally, FBL knockdown led to alterations in 18S ribosome structure confirmed by SHAPE and specifically reduced RPS28 incorporation into ribosomes. Notably, silencing RPS28 also disrupted both the oncogenic phenotype and downregulated MTA1, IRAK1, and TMSB10 expression. These findings reveal a complex interplay between FBL, rRNA Nm modifications, and RPS28 in shaping oncogenic protein pools and ribosomal composition in TNBC, offering promising insights into therapeutic approaches targeting this aggressive cancer subtype.
Place, publisher, year, edition, pages
Elsevier, 2026. Vol. 639, article id 218124
Keywords [en]
2′-O-methylation, Fibrillarin, IRAK1, MTA1, Ribosome heterogeneity, RPS28, TMSB10, Translation, Triple-negative breast cancer
National Category
Cancer and Oncology
Identifiers
URN: urn:nbn:se:umu:diva-247899DOI: 10.1016/j.canlet.2025.218124ISI: 001642367800001PubMedID: 41260515Scopus ID: 2-s2.0-105024875196OAI: oai:DiVA.org:umu-247899DiVA, id: diva2:2025999
Funder
Knut and Alice Wallenberg FoundationUmeå UniversityRegion VästerbottenSwedish Research Council, 2017-01636Swedish Research Council, 2022-01322Swedish Cancer Society, 190337 PjSwedish Cancer Society, 22 2455 PjCancerforskningsfonden i Norrland, LP22-2333The Kempe Foundations, JCK-2150The Kempe Foundations, SMK21-00602026-01-082026-01-082026-01-08Bibliographically approved