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  • 1. Dobler, G.
    et al.
    Bestehorn, M.
    Antwerpen, M.
    Överby, Anna K.
    Umeå University, Faculty of Medicine, Department of Clinical Microbiology.
    Complete Genome Sequence of a Low-Virulence Tick-Borne Encephalitis Virus Strain2016In: Microbiology Resource Announcements, E-ISSN 2576-098X, Vol. 4, no 5, article id e01145-16Article in journal (Refereed)
    Abstract [en]

    We report here the complete genome sequence (GenBank accession no. KX268728) of tick-borne encephalitis strain HB171/11, isolated from an Ixodes ricinus tick from a natural focus where human neurological disease is rare. The strain shows unique characteristics in neuroinvasiveness and neurovirulence.

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  • 2. Sidjabat, Hanna E.
    et al.
    Håkansson, Eva Grahn
    Umeå University, Faculty of Medicine, Department of Clinical Microbiology. Essum AB.
    Cervin, Anders
    Draft Genome Sequence of the Oral Commensal Streptococcus oralis 89a with Interference Activity against Respiratory Pathogens2016In: Microbiology Resource Announcements, E-ISSN 2576-098X, Vol. 4, no 1, article id e01546-15Article in journal (Refereed)
    Abstract [en]

    We report the draft genome sequence of the oral commensal Streptococcus oralis 89a isolated from the throat of a healthy child during a streptococcal tonsillitis outbreak in Umea, Sweden. S. oralis 89a was known to have interference activity against respiratory pathogens in which the colicin V was the potential bacteriocin-encoding gene.

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  • 3.
    Svensson, Daniel
    et al.
    Umeå University, Faculty of Science and Technology, Department of Chemistry. Computational Life Science Cluster (CLiC), Umeå University, Umeå, Sweden; Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Öhrman, Caroline
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Bäckman, Stina
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Karlsson, Edvin
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Nilsson, Elin
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Byström, Mona
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Lärkeryd, Adrian
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Myrtennäs, Kerstin
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Stenberg, Per
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Qu, Ping-hua
    Trygg, Johan
    Umeå University, Faculty of Science and Technology, Department of Chemistry. Computational Life Science Cluster (CLiC), Umeå University, Umeå, Sweden.
    Scholz, Holger C.
    Forsman, Mats
    Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Sjödin, Andreas
    Umeå University, Faculty of Science and Technology, Department of Chemistry. Computational Life Science Cluster (CLiC), Umeå University, Umeå, Sweden; Division of CBRN Security and Defence, FOI–Swedish Defence Research Agency, Umeå, Sweden.
    Complete Genome Sequence of Francisella guangzhouensis Strain 08HL01032(T), Isolated from Air-Conditioning Systems in China2015In: Microbiology Resource Announcements, E-ISSN 2576-098X, Vol. 3, no 2, article id e00024-15Article in journal (Refereed)
    Abstract [en]

    We present the complete genome sequence of Francisella guangzhouensis strain 08HL01032(T), which consists of one chromosome (1,658,482 bp) and one plasmid ( 3,045 bp) with G+C contents of 32.0% and 28.7%, respectively.

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  • 4.
    Tükenmez, Hasan
    et al.
    Umeå University, Faculty of Science and Technology, Department of Chemistry. Umeå University, Faculty of Medicine, Umeå Centre for Microbial Research (UCMR). Umeå University, Faculty of Medicine, Molecular Infection Medicine Sweden (MIMS). Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine). Umeå University, Faculty of Science and Technology, Department of Molecular Biology (Faculty of Science and Technology).
    Nye, Taylor M.
    Department of Molecular Microbiology, Washington University School of Medicine, MO, St. Louis, United States; Center for Women's Infectious Disease Research, Washington University School of Medicine, MO, St. Louis, United States.
    Bonde, Mari
    QureTech Bio, Umeå, Sweden.
    Caparon, Michael G.
    Department of Molecular Microbiology, Washington University School of Medicine, MO, St. Louis, United States; Center for Women's Infectious Disease Research, Washington University School of Medicine, MO, St. Louis, United States.
    Almqvist, Fredrik
    Umeå University, Faculty of Science and Technology, Department of Chemistry. Umeå University, Faculty of Medicine, Umeå Centre for Microbial Research (UCMR).
    Hultgren, Scott J.
    Department of Molecular Microbiology, Washington University School of Medicine, MO, St. Louis, United States; Center for Women's Infectious Disease Research, Washington University School of Medicine, MO, St. Louis, United States.
    Johansson, Jörgen
    Umeå University, Faculty of Medicine, Umeå Centre for Microbial Research (UCMR). Umeå University, Faculty of Medicine, Molecular Infection Medicine Sweden (MIMS). Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
    Complete Genome Sequence of the Uropathogenic Methicillin-Resistant Staphylococcus aureus Strain MRSA-13692022In: Microbiology Resource Announcements, E-ISSN 2576-098X, Vol. 11, no 10Article in journal (Refereed)
    Abstract [en]

    MRSA-1369 is a uropathogenic methicillin-resistant Staphylococcus aureus (MRSA) strain. Here, we present the complete genome sequence of MRSA-1369, which consists of one chromosome (2.87 Mb) and two plasmids (16.68 kb and 3.13 kb). This will serve as a reference genome for future Staphylococcus aureus pathogenesis and multiomic studies.

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  • 5.
    Zlatkov, Nikola
    et al.
    Umeå University, Faculty of Medicine, Umeå Centre for Microbial Research (UCMR). Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
    Gunnari, Wilma
    Umeå University, Faculty of Medicine, Umeå Centre for Microbial Research (UCMR). Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
    Resch, Ulrike
    Department of Vascular Biology and Thrombosis Research, Center of Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria.
    Comparative label-free proteomics of the neonatal meningitis-causing Escherichia coli K1 IHE3034 and RS218 morphotypes2024In: Microbiology Resource Announcements, E-ISSN 2576-098X, Vol. 13, no 2, article id e00960-23Article in journal (Refereed)
    Abstract [en]

    The proteome of two newborn meningitis Escherichia coli K1 (NMEC) morphotypes was examined via a label-free proteomics approach. Besides shared NMEC virulence factors, the two strains have different evolutionary strategies-strain IHE3034 tends to perform anaerobic respiration continuously, while strain RS218 maintains its filamentous morphotype due to active SOS response.

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