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  • 1.
    Das, Biswajit
    et al.
    Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
    Mishra, Pradeep
    Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
    Pandey, Praveen
    Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
    Sharma, Sushma
    Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
    Chabes, Andrei
    Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
    dNTP concentrations do not increase in mammalian cells in response to DNA damage2022In: Cell Metabolism, ISSN 1550-4131, E-ISSN 1932-7420, Vol. 34, no 12, p. 1895-1896Article in journal (Refereed)
  • 2. Dash, Tapan Kumar
    et al.
    Patra, Diptendu
    Venu, Parvathy
    Das, Biswajit
    Tumor Microenvironment and Animal Models Laboratory, Department of Translational Research, Institute of Life Sciences, Odisha, India.
    Bhattacharyya, Rangeet
    Shunmugam, Raja
    Hetero-trifunctional malonate-based nanotheranostic system for targeted breast cancer therapy2021In: ACS Applied Bio Materials, E-ISSN 2576-6422, Vol. 4, no 6, p. 5251-5265Article in journal (Refereed)
    Abstract [en]

    Designing multifunctional linkers is crucial for tricomponent theranostic targeted nanomedicine development as they are essential to enrich polymeric systems with different functional moieties. Herein, we have obtained a hetero-trifunctional linker from malonic acid and demonstrated its implication as an amphiphilic targeted nanotheranostic system (CB DX UN PG FL). We synthesized it with varying hydrophilic segment to fine-tune the hydrophobic/hydrophilic ratio to optimize its self-assembly. pH-responsive hydrazone-linked doxorubicin was conjugated to the backbone (UN PG FL) containing folate as a targeting ligand. Cobalt carbonyl complex was used for T-2-weighted magnetic resonance imaging (MRI). Electron micrographs of optimized molecule CB DX UN PG((4 kDa)) FL in an aqueous system have demonstrated about 50-60 nm-sized uniform micelles. The relaxivity study and the one-dimensional (1D) imaging experiments dearly revealed the effect of the nanotheranostics system on transverse relaxation (T-2) of water molecules, which validated the system as a T-2-weighted MRI contrast agent. The detailed in vitro biological studies validated the targeted delivery and anticancer potential of CB DX UN PG((4 kDa)) FL. Combining the data on transverse relaxation, folate mediated uptake, and anticancer activity, the designed molecule will have a significant impact on the development of targeted theranostic.

  • 3.
    de Jaime-Soguero, Anchel
    et al.
    Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
    Hattemer, Janina
    Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
    Bufe, Anja
    Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
    Haas, Alexander
    Department of Molecular Oncology, Section for Cellular Oncology, University Medical Center Göttingen (UMG), Göttingen, Germany.
    van den Berg, Jeroen
    Oncode Institute, Utrecht, Netherlands; Hubrecht Institute, Utrecht, Netherlands; KNAW (Royal Netherlands Academy of Arts and Sciences), Utrecht, Netherlands; University Medical Center Utrecht, Utrecht, Netherlands.
    van Batenburg, Vincent
    Oncode Institute, Utrecht, Netherlands; Hubrecht Institute, Utrecht, Netherlands; KNAW (Royal Netherlands Academy of Arts and Sciences), Utrecht, Netherlands; University Medical Center Utrecht, Utrecht, Netherlands.
    Das, Biswajit
    Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
    di Marco, Barbara
    Department of Clinical Neurobiology, University Hospital Heidelberg and German Cancer Research Center (DKFZ), Heidelberg, Germany.
    Androulaki, Stefania
    Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
    Böhly, Nicolas
    Department of Molecular Oncology, Section for Cellular Oncology, University Medical Center Göttingen (UMG), Göttingen, Germany.
    Landry, Jonathan J. M.
    Genomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
    Schoell, Brigitte
    Institute of Human Genetics, Heidelberg University, Heidelberg, Germany.
    Rosa, Viviane S.
    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
    Villacorta, Laura
    Genomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
    Baskan, Yagmur
    Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
    Trapp, Marleen
    Schaller Research Group, German Cancer Research Center (DKFZ), Heidelberg, Germany.
    Benes, Vladimir
    Genomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
    Chabes, Andrei
    Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
    Shahbazi, Marta
    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
    Jauch, Anna
    Institute of Human Genetics, Heidelberg University, Heidelberg, Germany.
    Engel, Ulrike
    Nikon Imaging Center at the University of Heidelberg, Bioquant, Heidelberg, Germany.
    Patrizi, Annarita
    Schaller Research Group, German Cancer Research Center (DKFZ), Heidelberg, Germany.
    Sotillo, Rocio
    Division of Molecular Thoracic Oncology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
    van Oudenaarden, Alexander
    Oncode Institute, Utrecht, Netherlands; Hubrecht Institute, Utrecht, Netherlands; KNAW (Royal Netherlands Academy of Arts and Sciences), Utrecht, Netherlands; University Medical Center Utrecht, Utrecht, Netherlands.
    Bageritz, Josephine
    Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
    Alfonso, Julieta
    Department of Clinical Neurobiology, University Hospital Heidelberg and German Cancer Research Center (DKFZ), Heidelberg, Germany.
    Bastians, Holger
    Department of Molecular Oncology, Section for Cellular Oncology, University Medical Center Göttingen (UMG), Göttingen, Germany.
    Acebrón, Sergio P.
    Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
    Developmental signals control chromosome segregation fidelity during pluripotency and neurogenesis by modulating replicative stress2024In: Nature Communications, E-ISSN 2041-1723, Vol. 15, no 1, article id 7404Article in journal (Refereed)
    Abstract [en]

    Human development relies on the correct replication, maintenance and segregation of our genetic blueprints. How these processes are monitored across embryonic lineages, and why genomic mosaicism varies during development remain unknown. Using pluripotent stem cells, we identify that several patterning signals—including WNT, BMP, and FGF—converge into the modulation of DNA replication stress and damage during S-phase, which in turn controls chromosome segregation fidelity in mitosis. We show that the WNT and BMP signals protect from excessive origin firing, DNA damage and chromosome missegregation derived from stalled forks in pluripotency. Cell signalling control of chromosome segregation declines during lineage specification into the three germ layers, but re-emerges in neural progenitors. In particular, we find that the neurogenic factor FGF2 induces DNA replication stress-mediated chromosome missegregation during the onset of neurogenesis, which could provide a rationale for the elevated chromosomal mosaicism of the developing brain. Our results highlight roles for morphogens and cellular identity in genome maintenance that contribute to somatic mosaicism during mammalian development.

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  • 4.
    Minz, Aliva Prity
    et al.
    Institute of Life Sciences, Nalco Square, Odisha, Bhubaneswar, India; Regional Centre for Biotechnology, Haryana, Faridabad, India.
    Das, Biswajit
    Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics. Institute of Life Sciences, Nalco Square, Odisha, Bhubaneswar, India.
    Mohapatra, Debasish
    Institute of Life Sciences, Nalco Square, Odisha, Bhubaneswar, India; School of Biotechnology, KIIT University, Odisha, Bhubaneswar, India.
    Suresh, Voddu
    Institute of Life Sciences, Nalco Square, Odisha, Bhubaneswar, India; Regional Centre for Biotechnology, Haryana, Faridabad, India.
    Mishra, Swayambara
    Institute of Life Sciences, Nalco Square, Odisha, Bhubaneswar, India; Regional Centre for Biotechnology, Haryana, Faridabad, India.
    Senapati, Shantibhusan
    Institute of Life Sciences, Nalco Square, Odisha, Bhubaneswar, India.
    Gemcitabine induces polarization of mouse peritoneal macrophages towards M1-like and confers antitumor property by inducing ROS production2022In: Clinical and Experimental Metastasis, ISSN 0262-0898, E-ISSN 1573-7276, Vol. 39, p. 783-800Article in journal (Refereed)
    Abstract [en]

    In patients with pancreatic cancer (PC), the peritoneal cavity is the second-most common site of metastasis after the liver. Peritoneal macrophages (PMs) have been demonstrated to play a significant role in the peritoneal metastases of different cancers. Gemcitabine (GEM) is known to affect PC-associated immune cells, including macrophages. However, its effect on PMs and its possible clinical implication is yet to be investigated. In this study, mouse-derived PMs were treated with GEM ex vivo to analyze the polarization status. Production of GEM-induced reactive oxygen species (ROS) and reactive nitrogen species was evaluated using DCFH-DA, DAF-FM, and Griess assay. Antitumor effects of PMs on UN-KC-6141and UN-KPC-961 murine PC cells were evaluated in presence and absence of GEM in vitro. Similarly, effect of GEM on human THP-1 macrophage polarization and its tumoricidal effect was studied in vitro. Furthermore, the effect of GEM-treated PMs on peritoneal metastasis of UN-KC-6141 cells was evaluated in a syngeneic mouse model of PC. GEM upregulated M1 phenotype-associated molecular markers (Tnf-α and Inos) in vitro in PMs obtained from naïve mouse. Moreover, IL-4-induced M2-like PMs reverted to M1-like after GEM treatment. Co-culture of UN-KC-6141 and UN-KPC-961 cancer cells with PMs in the presence of GEM increased apoptosis of these cells, whereas cell death was markedly reduced after N-acetyl-l-cysteine treatment. Corroborating these findings co-culture of GEM-treated human THP-1 macrophages also induced cell death in MIAPaCa-2 cancer cells. GEM-treated PMs injected intraperitoneally along with UN-KC-6141 cells into mice extended survival period, but did not stop disease progression and mortality. Together, GEM induced M1-like polarization of PMs from naive and/or M2-polarized PMs in a ROS-dependent manner. GEM-induced M1-like PMs prompted cytotoxicity in PC cells and delayed disease progression in vivo. 

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